Flagship Inn
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Flagship Inn
Affordable Rooms & Family Suites with easy access to all of Boothbay Harbor & the Botanical Gardens. Finding an affordable home away from home during your getaway to coastal Maine can be a challenge. Many Boothbay Harbor hotels may meet your budget but make you wish you'd just stayed home. We believe you shouldn't have to choose between comfort and cost!

We offer affordable accommodations with amazing service and comfort. Our friendly staff is eager to welcome you to our award-winning property. Whether you're traveling on your own, with friends, or with your family, we've got rooms that will fit your budget and your needs without skimping on service or lacking the comforts of home.
Services
The Flagship Inn & Suites offers a full array of services and amenities at our 80+ room hotel in Boothbay Harbor, Maine. We are one of the few motels that are open year-round in Boothbay Harbor and are always eager to welcome you with the finest accommodations. Whether you're on a family vacation, are on a romantic getaway, or are traveling for business, our staff is ready and waiting to serve you when you seek comfort at an affordable cost.
Our mission at Flagship Inn & Suites is to eliminate the challenge of finding affordable accommodations with the comforts of home. We would love to welcome you to our hotel in Boothbay Harbor, Maine! If you have any questions, need help with a reservation, or just want to share your experience with us, we would love to hear from you.
No matter your reason for visiting coastal Maine, our hotel in Boothbay Harbor, Maine, is ready to serve you with comfort at an affordable cost, 365 days a year. Flagship Inn & Suites is an award-winning, 80+ room property designed to fit your traveling needs and is open year-round. Each room or suite comes with a complimentary breakfast and access to our heated outdoor pool and hot tub.
If you're looking for a comfortable place to stay with incredible service and an affordable cost, our hotel in Boothbay Harbor, Maine, would love to welcome you. All of our rooms include amenities such as a complimentary breakfast, access to our outdoor heated pool & hot tub, cable TV with HBO, and free WiFi.
Are you coming to the coastal region of Maine for a family vacation? Our award-winning hotel in Boothbay Harbor is family-friendly and ready to serve you! Flagship Inn & Suites knows that families often need more space when traveling on a family vacation. Our family suites in Boothbay Harbor, Maine, are spacious accommodations that offer comfort at an affordable cost.
Reviews (20)
Rebecca Sinclair
Rebecca Sinclair
Dec 31, 2021
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The rooms aren't fancy but they were very clean and confortable. Breakfast had a nice variety of food and the hostess was helpful and pleasant. I would definetly stay there again.
Sasha Gibbons
Sasha Gibbons
Dec 16, 2021
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Rooms have everything you need. Restaurant on site. Convenience store across the street. Easy walk to town. Highly recommend!
Sonja Presgraves
Sonja Presgraves
Dec 12, 2021
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Great place. Front desk staff was courteous and efficient. Comfortable, clean rooms. Breakfast was sufficient. Nothing fancy. Great coffee. Free, on-site parking. Convenient location, close to restaurants and local sights. Would stay again.
Jennifer Tower
Jennifer Tower
Nov 24, 2021
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Enjoyed our stay here very much. Staff was welcoming and very friendly. Our room was standard and very clean with a fridge and microwave. They now have a craft restaurant and bar right on site as well as an ice cream stand with Giffords which was a great treat. Would return!
Melinda Watson
Melinda Watson
Nov 21, 2021
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Always choose the Handicapped Accessible Room, and it always meets my expectations. I appreciate this Inn which is in the town in which I have property, so it's convenient to my home. Thanks so very much!
John Fitzgerald
John Fitzgerald
Nov 07, 2021
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We have stayed at the Flagship Inn many times and have always enjoyed ourselves. This was our first visit using a dog friendly room. The room was perfect and the dog toys and treats were a nice touch. This place is wonderful and I would give it 5 stars!
Douglas Restrick
Douglas Restrick
Oct 15, 2021
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Convenient location. Very clean and comfortable accommodation. Due to COVID, housekeeping was extremely limited but did not interfere with our stay. Continental breakfast was acceptable. Overall, staying at Flagship Inn was a very positive experience and we would certainly stay there again on our next visit to Boothbay Harbor.
Pat Hassett
Pat Hassett
Sep 26, 2021
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A great stay in Boothbay Harbor. Check in was easy and the room was clean and comfortable. The coffee at breakfast was so good, and they even had hot breakfast sandwiches. The location is perfect for getting into Boothbay Harbor and visiting local attractions (Coastal Maine Botanical Garden and the railroad museum).
Michael Leary
Michael Leary
Sep 16, 2021
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Nice clean rooms, very friendly staff and dog friendly. Great location just outside the craziness of downtown Boothbay Harbor. Nice breakfast each morning and a fun restaurant for evenings right on site. Had a great BBQ on Saturday. There is a great dog walking area right across the bridge and behind the Carousel Theatre (Penny Lake Reservation) Another great dog walk spot nearby was Dodge Point
John C.
John C.
Oct 26, 2020
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This is more like a 2-story motel. The location is just minutes from the harbor area. There is a musical theater within 100 feet but this was closed during our stay. It would have been a wonderful experience for us to attend a show there then simply walk back to our room after. The rooms were clean and well equipped but the decor was certainly dated. The plastic chairs on the shared balcony must have been made from egg shells and would crack if you lean back too far. The free breakfast served both hot and cold items, For the price, this is likely one of the best bargains in the area .
Michael S.
Michael S.
Jul 25, 2020
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This is a perfect inn after a day outdoors. The rooms are impeccably clean and roomy. As of time of this review, the rooms seem recently renovated, water pressure is solid, friendly staff, and easy parking. The pool is clean and there's nothing like jumping into it after a day of hiking or boating. Complimentary breakfast is simple but does the job. Way better than a similarly priced Holiday Inn or Hampton Inn.
Cortney M.
Cortney M.
Oct 23, 2019
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I was really pleasantly pleased with my recent stay at this hotel. It is right up the road from all the shops but far enough away you don't hear all the hussle and bussle. The room was a good size and clean and for a reasonable price. I did not even realize they also have continental breakfast every morning. You could get bagels, muffins, waffles etc.... There is also an indoor pool and hot tub. If I came back to Boothbay again I would definitely stay here and recommend to others.
Ralph A.
Ralph A.
Jul 07, 2018
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Very friendly staff. clean rooms. and good complimentary breakfast. for in season rates I thought it was affordable. I have no complaints at all.
Brian V.
Brian V.
Jul 01, 2017
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Wasn't maybe as bad as two stars but things kept happening that just had to make me rate it 2.

Says free wifi. But we were in back rooms and it was extremely slow

Sheets don't fit the bed always loosing fitted sheet off the mattress

I THINK the people next door to us were long term stay on welfare and they were very rude to us and made us uncomfortable. Acted like they owned the place. Room 242. They were also loud at night after 10 talking outside the door.

Showers had very low water pressure.

Pool was nice. Nice to be able to have our dogs stay with us here. But needs some
Cara R.
Cara R.
Oct 19, 2016
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Let's be real: it's a motel with "inn" pricing. The two stars are for it being very clean, though the sheets are worn. The walls are super thin, so don't expect any quiet. Had I known this, I would have gone elsewhere, especially for paying $120/night. The toiletries and room set-up are what you get in a Rodeway motel, which charges half the price. When I had an issue with a noise like a washing machine against my room starting at 2:30 am, the night guy tried to ignore the call. It legit rang ten times before going to voicemail. I called a second time and he picked up on
Cristen H.
Cristen H.
Aug 23, 2016
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Super clean, very friendly staff, quiet and safe. Simply a great option for a solid, affordable stay at a motel in an ideal location. Will definitely stay here again if I travel back to the area.
Ann F.
Ann F.
Jun 20, 2015
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Was looking for somewhere overnight. Luckily found this place. It was not only affordable it Was also immaculate and staff was super friendly. Complimentary breakfast was great. Wish we could stay another night. We will definitely come back here again.
Kallie F.
Kallie F.
Apr 28, 2014
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We booked this because it is pet friendly. Our room was very very clean even though it is the pet room. They also left treats and toys for our dogs. It is just outside of Boothbay harbor downtown district, so very quiet. But it is close enough that you can walk into town in about 15-20 minutes which we suggest since parking in the harbor can be tough to find. They also serve a very good continental breakfast as part of the room rate.
Carl M.
Carl M.
Oct 06, 2013
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The motel was extremely clean. We brought our 8 lb dog, and stayed in a pet room. Breakfast is in a separate building. Hard boiled eggs, biscuits & gravy, toast, bagels, yogurt & trail mix. The people who cleaned or room, were the best. Left doggie treats for our dog.
We bought fresh oysters nearby, and shucked them on a picnic table out front.

They only have a few pet rooms, so get a reservation. Only down side was that they didn't take our hotelcoupons.com coupon with our dog.

Great location, about 1/2 mile from downtown. Grocery store two minute walk.
Local : for fresh oysters
Briana P.
Briana P.
Aug 04, 2013
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Have stayed here a few times. This is the first time in a "pet free" room. Was really disappointed. The mattress left us both with sore backs, the cover of one of the pillows had stains (and stayed despite cleaning service-we were here two nights), and they didn't give us another bag for the ice bucket. Guessing the cleaning staff is in need of a little "management" and maybe some newer mattresses are in order. Overall not the worst experience ever and might stay again, but the "pet friendly rooms" offer much less to complain about surprisingly.